STRINGSTRING
AT1G48580 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48580" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G48580Uncharacterized protein (454 aa)    
Predicted Functional Partners:
AT3G19920
Uncharacterized protein (416 aa)
           
  0.957
AT5G66230
Chalcone-flavanone isomerase family protein; Catalyzes the intramolecular cyclization of bicyclic chalcones into tricyclic (S)-flavanones. Responsible for the isomerization of 4,2’,4’,6’-tetrahydroxychalcone (also termed chalcone) into naringenin (By similarity) (545 aa)
     
   
  0.938
DTA4
Downstream target of AGL15-4 (299 aa)
           
  0.923
AT1G02360
Putative chitinase (272 aa)
           
  0.861
AT4G37900
Uncharacterized protein; Involved in development and stress responses, probably through an auxin-dependent mechanism (787 aa)
     
   
  0.793
MYB87
Myb domain protein 87 (305 aa)
     
   
  0.744
NAC090
NAC domain containing protein 90 (235 aa)
           
  0.670
LEA4-5
Late Embryogenesis Abundant 4-5 (158 aa)
           
  0.670
DAF1
F-box protein; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (461 aa)
           
  0.670
AT3G17520
Late embryogenesis abundant domain-containing protein (298 aa)
           
  0.670
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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