STRINGSTRING
AT1G48720 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48720" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G48720Uncharacterized protein (97 aa)    
Predicted Functional Partners:
AT1G49030
PLAC8 family protein; May be involved in heavy metals transport (224 aa)
           
  0.739
DRM1
Domains rearranged methylase 1; Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation (624 aa)
           
  0.673
HSFA1D
Heat shock transcription factor A1D; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (485 aa)
           
  0.559
CMT2
Chromomethylase 2; May be involved in the CpXpG methylation and in gene silencing (1295 aa)
           
  0.501
TT1
Transparent testa 1; May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed-21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed-21477081) (303 aa)
       
 
  0.484
HSFA1E
Heat shock transcription factor A1E; Transcriptional activator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (468 aa)
           
  0.472
ARAC5
RAC-like GTP binding protein 5; May be involved in cell polarity control during the actin-dependent tip growth of root hairs (196 aa)
           
  0.471
HSF3
Heat shock factor 3; Transcriptional activator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (481 aa)
           
  0.442
AT2G28390
SAND family protein (607 aa)
           
  0.426
DRM2
Domains rearranged methyltransferase 2; Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation (626 aa)
           
  0.424
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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