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AT1G48720 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48720" - Copia-type reverse transcriptase-like protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
AT1G48720Copia-type reverse transcriptase-like protein; Unknown protein; Has 229 Blast hits to 229 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (97 aa)    
Predicted Functional Partners:
AT1G49030
Protein PLANT CADMIUM RESISTANCE 6; May be involved in heavy metals transport (224 aa)
           
  0.866
DRM1
DNA (cytosine-5)-methyltransferase DRM1; Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation; Belongs to the class I-like SAM-binding methyltransferase superfamily. DRM-methyltransferase family (624 aa)
           
  0.553
PID2
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; Encodes PID2, a homolog of PID. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons (525 aa)
           
  0.489
ARAC5
Rac-like GTP-binding protein ARAC5; Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control (196 aa)
           
  0.438
TT1
C2H2 and C2HC zinc fingers superfamily protein; May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat. Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development; Belongs to the WIP C2H2-type zinc-finger protein family (303 aa)
     
 
  0.432
HSFA1D
Heat stress transcription factor A-1d; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (485 aa)
           
  0.432
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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