STRINGSTRING
AT1G48820 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48820" - Terpene synthase/cyclase family protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G48820Terpene synthase/cyclase family protein (561 aa)    
Predicted Functional Partners:
AT4G27415
Uncharacterized protein (44 aa)
           
  0.863
AT2G14635
Uncharacterized protein (61 aa)
           
  0.863
AT5G01200
Duplicated homeodomain-like superfamily protein (267 aa)
           
  0.554
AT1G75170
Sec.4-like phosphatidylinositol transfer-like protein (296 aa)
           
  0.554
AT1G50630
Uncharacterized protein (453 aa)
           
  0.554
AT1G07870
Protein kinase superfamily protein (538 aa)
           
  0.554
AT1G13195
RING/U-box superfamily protein (260 aa)
           
  0.503
AT3G26610
Pectin lyase-like superfamily protein (470 aa)
           
  0.491
ADF11
Actin depolymerizing factor 11; Actin-depolymerizing protein. Severs actin filaments (F- actin) and binds to actin monomers (140 aa)
           
  0.491
AT5G40310
Exonuclease-like protein (348 aa)
           
  0.489
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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