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AT1G48870 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G48870" - Transducin/WD40 repeat-like superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G48870Transducin/WD40 repeat-like superfamily protein; Its function is described as protein phosphatase type 2A regulator activity, signal transducer activity; Involved in signal transduction; Located in protein phosphatase type 2A complex, heterotrimeric G-protein complex; Expressed in sperm cell; Contains the following InterPro domains- Protein phosphatase 2A, regulatory subunit PR55 (InterPro-IPR000009), WD40 repeat 2 (InterPro-IPR019782), WD40 repeat (InterPro-IPR001680), G-protein beta WD-40 repeat, region (InterPro-IPR020472), WD40 repeat-like-containing domain (InterPro-IPR011046), WD [...] (593 aa)    
Predicted Functional Partners:
emb1644
Small nuclear ribonucleoprotein family protein; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splici [...] (129 aa)
       
      0.591
EMB2816
Small nuclear ribonucleoprotein family protein; Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5’-3’ mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splici [...] (99 aa)
       
      0.550
AT3G20890
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR-AT5G66010.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; P [...] (292 aa)
           
  0.487
RSW3
Glycosyl hydrolases family 31 protein; Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins (By similarity). Essential for stable accumulation of the receptor EFR that determines the specific perception of bacterial elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Required for sustained activation of EFR-mediated signaling, but not receptor FLS2-mediated signaling elicited by the bacterial flagellin flg22 (921 aa)
           
  0.414
HGL1
Heteroglycan glucosidase 1 (HGL1); Its function is described as hydrolase activity, hydrolyzing O-glycosyl compounds; Involved in carbohydrate metabolic process; Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Glycoside hydrolase, family 31 (InterPro-IPR000322), Glycoside hydrolase, catalytic core (InterPro-IPR017853); BEST Arabidopsis thaliana protein match is- Glycosyl hydrolases family 31 protein (TAIR-AT5G63840.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 139 [...] (991 aa)
           
  0.414
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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