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STRINGSTRING
AT1G49000 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49000" - Unknown protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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Experiments
Databases
Textmining
[Homology]
Score
AT1G49000Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in chloroplast; Expressed in stem; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (156 aa)    
Predicted Functional Partners:
AT2G27830
Uncharacterized protein At2g27830; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (190 aa)
           
  0.860
AT1G64370
Uncharacterized protein At1g64370; Unknown protein; Has 773 Blast hits to 375 proteins in 118 species- Archae - 0; Bacteria - 97; Metazoa - 421; Fungi - 108; Plants - 31; Viruses - 0; Other Eukaryotes - 116 (source- NCBI BLink) (178 aa)
           
  0.807
AT4G29780
Uncharacterized protein At4g29780; Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species- Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source- NCBI BLink) (540 aa)
           
  0.738
AT1G52060
Mannose-binding lectin superfamily protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in root; Contains the following InterPro domains- Mannose-binding lectin (InterPro-IPR001229); BEST Arabidopsis thaliana protein match is- Mannose-binding lectin superfamily protein (TAIR-AT1G52070.1); Has 1499 Blast hits to 773 proteins in 49 species- Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 2; Plants - 1479; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (314 aa)
           
  0.711
AT3G04640
Glycine-rich protein; Has 42937 Blast hits to 13549 proteins in 1124 species- Archae - 42; Bacteria - 16604; Metazoa - 12821; Fungi - 2296; Plants - 5249; Viruses - 609; Other Eukaryotes - 5316 (source- NCBI BLink) (159 aa)
     
   
  0.704
AT1G27900
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4; May be involved in pre-mRNA splicing (700 aa)
           
  0.699
BEH1
BES1/BZR1 homolog 1 (BEH1); Its function is described as transcription regulator activity; Involved in biological_process unknown; Located in vacuole; Expressed in 17 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- BZR1, transcriptional repressor (InterPro-IPR008540); BEST Arabidopsis thaliana protein match is- Brassinosteroid signalling positive regulator (BZR1) family protein (TAIR-AT1G75080.2); Has 1801 Blast hits to 330 proteins in 47 species- Archae - 0; Bacteria - 4; Metazoa - 13; Fungi - 27; Plants - 263; Viruses - 0; Other Eukaryote [...] (276 aa)
           
  0.643
AT1G04770
Tetratricopeptide repeat (TPR)-like superfamily protein; Involved in the utilization of stored sulfate under sulfur-deficient conditions (303 aa)
           
  0.642
GSTL1
Glutathione transferase lambda 1; Catalyzes the glutathione-dependent reduction of S- glutathionylquercetin to quercetin. In vitro, possesses glutathione-dependent thiol transferase activity toward 2- hydroxyethyl disulfide (HED) (237 aa)
     
   
  0.587
bZIP3
Putative bZIP transcription factor AtbZip3; Basic leucine-zipper 3 (bZIP3); Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription, DNA-dependent; Expressed in 9 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Basic-leucine zipper (bZIP) transcription factor (InterPro-IPR004827), bZIP transcription factor, bZIP-1 (InterPro-IPR011616); BEST Arabidopsis thaliana protein match is- basic leucine-zipper 42 (TAIR-AT3G30530.1); Has 1902 Blast hits to 1888 protei [...] (186 aa)
           
  0.580
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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