STRINGSTRING
AT1G49000 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49000" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49000Uncharacterized protein (156 aa)    
Predicted Functional Partners:
RPL3P
50S ribosomal protein L3-2; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
           
  0.677
AT2G30760
Uncharacterized protein (92 aa)
           
  0.677
AT1G25260
Ribosomal protein L10 family protein (235 aa)
           
  0.677
AT3G04640
Glycine-rich protein (159 aa)
           
  0.676
AT3G13580
60S ribosomal protein L7-4 (244 aa)
           
  0.670
AT2G40010
60S acidic ribosomal protein P0-1; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (317 aa)
           
  0.670
AT2G36930
Zinc finger (C2H2 type) family protein (198 aa)
           
  0.670
NRPA2
Nuclear RNA polymerase A2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and NRPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (1178 aa)
           
  0.670
AT4G29780
Uncharacterized protein (540 aa)
           
  0.634
AT1G74770
Zinc ion binding (1259 aa)
           
  0.631
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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