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AT1G49030 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49030" - Protein PLANT CADMIUM RESISTANCE 6 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49030Protein PLANT CADMIUM RESISTANCE 6; May be involved in heavy metals transport (224 aa)    
Predicted Functional Partners:
AT1G48720
Copia-type reverse transcriptase-like protein; Unknown protein; Has 229 Blast hits to 229 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (97 aa)
           
  0.866
DRM1
DNA (cytosine-5)-methyltransferase DRM1; Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation; Belongs to the class I-like SAM-binding methyltransferase superfamily. DRM-methyltransferase family (624 aa)
           
  0.556
ARAC5
Rac-like GTP-binding protein ARAC5; Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control (196 aa)
           
  0.448
HSFA1D
Heat stress transcription factor A-1d; Transcriptional regulator that specifically binds DNA sequence 5’-AGAAnnTTCT-3’ known as heat shock promoter elements (HSE) (485 aa)
           
  0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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