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AT1G49030 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49030" - PLAC8 family protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49030PLAC8 family protein; May be involved in heavy metals transport (224 aa)    
Predicted Functional Partners:
AT1G48720
Uncharacterized protein (97 aa)
           
  0.739
AT2G34340
Uncharacterized protein (136 aa)
           
  0.637
AT3G52870
IQ calmodulin-binding motif family protein; May be involved in biotic and abiotic stress responses (456 aa)
           
  0.596
IQD22
IQ-domain 22 (484 aa)
           
  0.553
DEP
DESPIERTO (161 aa)
     
   
  0.489
TRM13
TON1 Recruiting Motif 13 (720 aa)
           
  0.456
FH6
Formin homolog 6; Might be involved in the organization and polarity of the actin cytoskeleton (899 aa)
           
  0.448
UBC17
Ubiquitin-conjugating enzyme; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins (161 aa)
           
  0.445
AT5G59930
Cysteine/Histidine-rich C1 domain family protein (656 aa)
     
        0.438
EXPA17
Expansin A17; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity). Target of the transcriptional activator LBD18. Regulated by LBD18 to promote lateral root formation (PubMed-23872272) (255 aa)
     
        0.438
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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