STRINGSTRING
AT1G49290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49290" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49290Uncharacterized protein (338 aa)    
Predicted Functional Partners:
AT3G49770
Uncharacterized protein (190 aa)
           
  0.868
AT1G11810
F-box associated ubiquitination effector protein (377 aa)
           
  0.868
AT1G66630
E3 ubiquitin-protein ligase SINA-like 3; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates (By similarity) (303 aa)
           
  0.863
AT1G60400
F-box protein (403 aa)
           
  0.841
AT2G19400
cAMP-dependent, cGMP-dependent and protein kinase C-like protein (527 aa)
     
   
  0.817
AT1G54280
Phospholipid-transporting ATPase 6; Involved in transport of phospholipids and in regulation of pollen plasma membrane lipid asymmetry (1240 aa)
     
   
  0.785
AT5G15140
Aldose 1-epimerase (490 aa)
     
   
  0.740
AT3G50720
Putative protein kinase (377 aa)
           
  0.740
AT5G54350
Uncharacterized protein (261 aa)
           
  0.733
AT4G11940
Uncharacterized protein (264 aa)
           
  0.703
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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