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AT1G49390 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49390" - 2-oxoglutarate in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G493902-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein (348 aa)    
Predicted Functional Partners:
AT1G40390
DNAse I-like superfamily protein (426 aa)
           
  0.987
VAR3
VARIEGATED 3; Probable component of some protein complex required for chloroplast and palisade cell development (758 aa)
           
  0.732
AT5G35930
AMP-dependent synthetase and ligase family protein (1040 aa)
         
  0.524
AT1G80320
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein (320 aa)
   
          0.521
VAR1
VARIEGATED 1; Part of a complex that function as an ATP-dependent zinc metallopeptidase. Involved in the thylakoid formation and in the removal of damaged D1 in the photosystem II, preventing cell death under high-intensity light conditions. Not involved in the degradation of the light-harvesting complex of photosystem II (LHC II) or in thermotolerance (704 aa)
           
  0.474
AT5G54940
Translation initiation factor SUI1 family protein (112 aa)
              0.454
AT5G54760
Translation initiation factor SUI1 family protein (113 aa)
              0.454
AT5G11900
Translation initiation factor SUI1 family protein (198 aa)
              0.454
AT4G27130
Protein translation factor SUI1-1; Probably involved in translation (113 aa)
              0.454
AT1G54290
Protein translation factor SUI1-2; Probably involved in translation (113 aa)
              0.454
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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