STRINGSTRING
emb1129 protein (Arabidopsis thaliana) - STRING interaction network
"emb1129" - Embryo defective 1129 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emb1129Embryo defective 1129 (116 aa)    
Predicted Functional Partners:
At5g47320
Ribosomal protein S19; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13 (212 aa)
   
  0.999
AT1G64880
Ribosomal protein S5 family protein (515 aa)
   
  0.999
AT3G47370
40S ribosomal protein S20-2 (122 aa)
   
  0.999
AT5G59850.1
40S ribosomal protein S15a-1 (130 aa)
   
  0.999
AT1G34030
40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA (152 aa)
   
  0.999
AT5G02960
40S ribosomal protein S23-2 (142 aa)
   
  0.999
AT5G62300.1
40S ribosomal protein S20-1 (124 aa)
   
  0.999
AT3G52580
40S ribosomal protein S14-3 (150 aa)
   
  0.999
RPS15AD
Regulated by TCP20 (130 aa)
   
  0.999
AT3G12370
Large subunit ribosomal protein L10 (171 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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