• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
emb1129 protein (Arabidopsis thaliana) - STRING interaction network
"emb1129" - Uncharacterized protein At1g49400/F13F21_17 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emb1129Uncharacterized protein At1g49400/F13F21_17; Embryo defective 1129 (emb1129); Its function is described as structural constituent of ribosome; Involved in translation, embryo development ending in seed dormancy; Located in cytosolic small ribosomal subunit, ribosome, intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleic acid-binding, OB-fold-like (InterPro-IPR016027), Nucleic acid-binding, OB-fold (InterPro-IPR012340), Ribosomal protein S17, bacterial-type (InterPro-IPR019984), Ribosomal protein S17 (InterPr [...] (116 aa)    
Predicted Functional Partners:
AT3G59650
Mitochondrial ribosomal protein L51/S25/CI-B8 family protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in mitochondrion; Expressed in 21 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Ribosomal protein/NADH dehydrogenase domain (InterPro-IPR007741) (146 aa)
     
 
  0.986
AT2G43030
50S ribosomal protein L3-1, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (271 aa)
 
 
  0.978
AT4G31460
Uncharacterized protein AT4g31460; Ribosomal L28 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in ribosome, intracellular; Expressed in 22 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L28 (InterPro-IPR001383); Has 1063 Blast hits to 1063 proteins in 348 species- Archae - 0; Bacteria - 428; Metazoa - 98; Fungi - 129; Plants - 40; Viruses - 0; Other Eukaryotes - 368 (source- NCBI BLink) (212 aa)
     
 
  0.975
RPL3P
50S ribosomal protein L3-2, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (324 aa)
   
 
  0.974
AT3G49080
Ribosomal protein S5 domain 2-like superfamily protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic small ribosomal subunit, ribosome, intracellular; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein S9 (InterPro-IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro-IPR020568), Ribosomal protein S9, conserved site (InterPro-IPR020574), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro-IPR014721); BEST Arabidopsis thaliana pro [...] (430 aa)
   
 
  0.970
At3g03600
Ribosomal protein S2, mitochondrial; Structural component of the mitochondrial ribosome small subunit (219 aa)
   
 
  0.970
RPS9
Ribosomal protein S9, nuclear encoded component of the chloroplast ribosome (208 aa)
   
 
  0.969
rps2
30S ribosomal protein S2, chloroplastic; Chloroplast ribosomal protein S2 (236 aa)
   
 
  0.969
AT3G18760
Translation elongation factor EF1B/ribosomal protein S6 family protein; Its function is described as structural constituent of ribosome, rRNA binding; Involved in translation; Located in ribosome; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation elongation factor EF1B/ribosomal protein S6 (InterPro-IPR014717), Ribosomal protein S6 (InterPro-IPR000529); Has 47 Blast hits to 47 proteins in 22 species- Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink) (139 aa)
     
 
  0.969
RPL5B
60S ribosomal protein L5-2; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
 
  0.961
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (9%) [HD]