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STRINGSTRING
AT1G49470 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49470" - Transmembrane epididymal protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G49470Transmembrane epididymal protein (DUF716); Family of unknown function (DUF716) ; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Expressed in 20 plant structures; Expressed during 10 growth stages; Contains the following InterPro domains- Protein of unknown function DUF716 (InterPro-IPR006904); BEST Arabidopsis thaliana protein match is- Family of unknown function (DUF716) (TAIR-AT1G55230.1); Has 395 Blast hits to 395 proteins in 46 species- Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 0; Plants - 236 [...] (302 aa)    
Predicted Functional Partners:
AT5G66820
Unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (519 aa)
           
  0.451
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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