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AT1G49475 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49475" - AP2/B3-like transcriptional factor family protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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[Homology]
Score
AT1G49475AP2/B3-like transcriptional factor family protein; Its function is described as DNA binding, sequence-specific DNA binding transcription factor activity; Involved in regulation of transcription, DNA-dependent; Located in cellular_component unknown; Contains the following InterPro domains- Transcriptional factor B3 (InterPro-IPR003340); BEST Arabidopsis thaliana protein match is- AP2/B3-like transcriptional factor family protein (TAIR-AT3G18960.1); Has 448 Blast hits to 416 proteins in 17 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryo [...] (190 aa)    
Predicted Functional Partners:
RTV1
B3 domain-containing protein REM19; Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes (226 aa)
           
  0.837
AT3G58770
Uncharacterized protein T20N10_120; Unknown protein; Has 38 Blast hits to 36 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink) (771 aa)
           
  0.832
AT5G56240
Hapless protein; Involved in biological_process unknown; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- hapless 8 (TAIR-AT5G56250.1) (987 aa)
           
  0.806
HAP8
Uncharacterized protein At5g56250; HAPLESS 8 (HAP8); Located in chloroplast; Expressed in 22 plant structures; Expressed during 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56240.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (811 aa)
           
  0.668
DRIP2
E3 ubiquitin protein ligase DRIP2; E3 ubiquitin-protein ligase that acts as a negative regulator of the response to water stress. Mediates ubiquitination and subsequent proteasomal degradation of the drought-induced transcriptional activator DREB2A. Functionally redundant with DRIP1 (420 aa)
           
  0.410
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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