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AT1G49590 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49590" - C2H2 and C2HC zinc finger protein in Arabidopsis thaliana
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49590C2H2 and C2HC zinc finger protein (242 aa)    
Predicted Functional Partners:
U2B'
U2 small nuclear ribonucleoprotein B; Involved in nuclear pre-mRNA splicing (232 aa)
       
  0.981
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
       
  0.978
AT3G55930
Pre-mRNA-splicing factor 3 (437 aa)
       
  0.972
SR45
Arginine/serine-rich 45; Involved in 5’ and 3’ splicing site selection of introns, and may bridge the 5’ and 3’ components of the spliceosome. Isoform 1 is required during flower petal development and isoform 2 is involved in root growth. Regulates negatively glucose and abscisic acid (ABA) signaling during early seedling development. Involved in the RNA-directed DNA methylation pathway (PubMed-22274613) (425 aa)
       
  0.958
AT5G44500
Small nuclear ribonucleoprotein B and B’ (254 aa)
       
  0.955
AT5G64270
Putative splicing factor (1269 aa)
       
    0.955
ATO
ATROPOS (504 aa)
       
    0.955
NRPB1
RNA polymerase II large subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. NRPB1 is part of the core element with the central large cleft, the cl [...] (1839 aa)
     
    0.953
U2AF35B
Splicing factor U2af small subunit B; Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3’ splice sites (283 aa)
     
 
  0.953
emb1220
Embryo defective 1220 (485 aa)
     
    0.952
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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