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AT1G49850 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49850" - RING/U-box superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49850RING/U-box superfamily protein (250 aa)    
Predicted Functional Partners:
AT3G29130
Uncharacterized protein (168 aa)
       
      0.618
AT1G09660
RNA-binding KH domain-containing protein (298 aa)
     
 
  0.607
AT3G08530
Clathrin, heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters (1703 aa)
     
 
  0.605
MYB70
Myb domain protein 70 (309 aa)
     
      0.602
NIP3;1
Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes (323 aa)
     
      0.590
EXO70E2
Exocyst complex component 7 (639 aa)
     
      0.590
LSU2
RESPONSE TO LOW SULFUR 2 (94 aa)
       
      0.588
AT5G19960
RNA recognition motif-containing protein (337 aa)
       
      0.588
AT4G24840
Uncharacterized protein (756 aa)
       
      0.588
AT4G17680
SBP (S-ribonuclease binding protein) family protein (314 aa)
       
      0.588
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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