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STRINGSTRING
AT1G49850 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49850" - Probable E3 ubiquitin-protein ligase RHY1A in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AT1G49850Probable E3 ubiquitin-protein ligase RHY1A; Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro (250 aa)    
Predicted Functional Partners:
MYB70
Putative MYB family transcription factor; Member of the R2R3 factor gene family (309 aa)
       
 
  0.779
BHLH32
Transcription factor AIG1; Encodes a basic helix-loop-helix transcription factor that is expressed in the hypophysis-adjacent embryo cells, and is required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation and Pi content (344 aa)
       
 
  0.771
AT5G19960
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, glycine rich protein (InterPro-IPR015465), RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- cold, circadian rhythm, and RNA binding 1 (TAIR-AT [...] (337 aa)
       
      0.763
AT4G17680
SBP (S-ribonuclease binding protein) family protein; Its function is described as zinc ion binding; Involved in biological_process unknown; Located in cellular_component unknown; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro-IPR017066); BEST Arabidopsis thaliana protein match is- SBP (S-ribonuclease binding protein) family protein (TAIR-AT5G47050.1); Has 422 Blast hits to 421 proteins in 63 species- Archae - 0; Bacteria - 11; Metazoa - 35; Fungi - 13; Plants - 325; Viruses - 3; Other Eukaryot [...] (314 aa)
       
      0.762
EXO70E2
Exocyst subunit exo70 family protein E2; Influences the subcellular localization patterns of other exocyst complex proteins (e.g. SEC5A, SEC15A, SEC15B and EXO84B) leading to their recruitment to exocyst, well-defined large punctate structures throughout the cytosol. Essential component for the formation and the recruitment of exocyst subunits to the exocyst-positive organelle (EXPO), a secreted double membrane structure also called extracellular exosome, that acts as a sequester for cytosolic proteins to release them into the apoplast; Belongs to the EXO70 family (639 aa)
       
      0.762
LSU2
Protein RESPONSE TO LOW SULFUR 2; May be involved in defense responses monitoring. Probably implicated into osmotic stress signaling (94 aa)
       
      0.762
AT4G24840
Oligomeric golgi complex subunit-like protein; Its function is described as molecular_function unknown; Involved in protein transport, Golgi organization; Located in vacuole; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- COG complex component, COG2 (InterPro-IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (756 aa)
       
      0.762
MAP70-5
Microtubule-associated proteins 70-5; Plant-specific protein that interact with microtubules and regulates microtubule dynamics. May play a role in anisotropic cell expansion and organ growth. In association with MAP70.1, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation (513 aa)
       
      0.762
AT4G01090
Protein of unknown function (DUF3133); Contains the following InterPro domains- Protein of unknown function DUF3133 (InterPro-IPR021480); BEST Arabidopsis thaliana protein match is- Protein of unknown function (DUF3133) (TAIR-AT1G01440.1); Has 1545 Blast hits to 1451 proteins in 231 species- Archae - 0; Bacteria - 62; Metazoa - 476; Fungi - 316; Plants - 452; Viruses - 2; Other Eukaryotes - 237 (source- NCBI BLink) (714 aa)
       
      0.762
LSU1
RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is- response to low sulfur 3 (TAIR-AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (94 aa)
       
      0.762
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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