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AT1G49990 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G49990" - F-box protein in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G49990F-box protein (430 aa)    
Predicted Functional Partners:
c-NAD-MDH3
Malate dehydrogenase (339 aa)
     
        0.438
MKK3
Mitogen-activated protein kinase kinase 3; MKK3-MPK6 module plays an important role in the jasmonate signal transduction pathway through the negative regulation of MYC2/JIN1 expression. Activates by phosphorylation the downstream MPK6, MPK7 and MPK8. MKK3-MPK7 module acts as a positive regulator of PR1 gene expression. MKK3-MPK8 module negatively regulates ROS accumulation through controlling expression of the RBOHD gene (520 aa)
     
        0.438
AT4G24970
Histidine kinase-like ATPase domain-containing protein; Exhibits ATPase activity. Binds DNA/RNA in a non- specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing (707 aa)
     
        0.438
AT3G56890
F-box associated ubiquitination effector family protein (219 aa)
     
        0.438
AT3G03370
Uncharacterized protein (244 aa)
     
        0.438
AT2G45630
D-isomer specific 2-hydroxyacid dehydrogenase-like protein (338 aa)
     
        0.438
ACS4
1-aminocyclopropane-1-carboxylate synthase; 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1- aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene (474 aa)
     
        0.438
AT2G02590
Uncharacterized protein (324 aa)
     
        0.438
AT1G24290
AAA-type ATPase-like protein (525 aa)
     
        0.438
ATXR5
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5; Histone methyltransferase that specifically monomethylates ’Lys-37’ of histone H3 (H3K27me1). Has much higher activity on nucleosomes containing H3.1 than H3.3. Involved in the formation of constitutive heterochromatin and the silencing of heterochromatic elements. Influences which sets of rRNA gene variants are expressed or silenced (379 aa)
     
        0.437
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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