STRINGSTRING
AT1G50020 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50020" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50020Uncharacterized protein (209 aa)    
Predicted Functional Partners:
AT1G50000
Methyltransferases (296 aa)
           
  0.736
AT4G10320
isoleucyl-tRNA synthetase (1190 aa)
           
  0.710
AT3G44820
Phototropic-responsive NPH3 family protein; May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (651 aa)
           
  0.710
AT2G42780
Uncharacterized protein (293 aa)
           
  0.710
AT1G11950
Transcription factor jumonji (jmjC) domain-containing protein (875 aa)
           
  0.710
AT1G14345
NAD(P)-linked oxidoreductase-like protein (196 aa)
     
   
  0.660
AT2G21530
SMAD/FHA domain-containing protein (209 aa)
     
   
  0.647
AT5G47070
Protein kinase superfamily protein (410 aa)
           
  0.631
AT1G19170
Pectin lyase-like protein (506 aa)
           
  0.630
AT3G12345
Uncharacterized protein (186 aa)
     
   
  0.628
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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