STRINGSTRING
AT1G50040 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50040" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50040Uncharacterized protein (460 aa)    
Predicted Functional Partners:
AT3G19680
Uncharacterized protein (491 aa)
     
     
0.651
AT1G10020
Uncharacterized protein (461 aa)
     
     
0.508
EXL5
EXORDIUM like 5; May play a role in a brassinosteroid-dependent regulation of growth and development (363 aa)
     
        0.443
AT5G25240
Uncharacterized protein (131 aa)
     
        0.430
DREB26
Dehydration response element-binding protein 26; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity) (230 aa)
     
        0.429
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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