STRINGSTRING
AT1G50060 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50060" - Putative pathogenesis-related protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50060Putative pathogenesis-related protein (161 aa)    
Predicted Functional Partners:
AT5G54370
Late embryogenesis abundant protein-like protein (337 aa)
     
        0.658
AT1G52060
Mannose-binding lectin superfamily protein (314 aa)
     
        0.567
AT1G50720
Stigma-specific stig1-like protein (154 aa)
   
        0.545
AT1G52070
Mannose-binding lectin superfamily protein (315 aa)
     
        0.495
AT5G60530
Late embryogenesis abundant protein-like protein (439 aa)
     
        0.489
sks15
SKU5 similar 15 (541 aa)
     
        0.489
AT1G52050
Mannose-binding lectin superfamily protein (313 aa)
     
        0.489
AT5G10130
pollen_Ole_e_I-domain containing protein; Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization. Not regulated by FLX (164 aa)
     
        0.476
AT3G03500
TatD related DNase (272 aa)
     
        0.463
AT2G43600
Chitinase-like protein (273 aa)
     
        0.463
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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