STRINGSTRING
AT1G50080 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50080" - Uncharacterized protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50080Uncharacterized protein (91 aa)    
Predicted Functional Partners:
SK11
SKP1-like 11; Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F- box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F- box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development (152 aa)
     
      0.449
AT5G51420
Putative long-chain-alcohol O-fatty-acyltransferase 11; Catalyzes the final step in the synthesis of long-chain linear esters (waxes) (435 aa)
     
        0.438
AT4G18720
Transcription factor IIS protein (266 aa)
     
        0.438
AT1G35030
Uncharacterized protein (216 aa)
     
        0.437
AT4G01890
Pectin lyase-like superfamily protein (468 aa)
     
        0.436
DEP
DESPIERTO (161 aa)
     
        0.436
AT5G59930
Cysteine/Histidine-rich C1 domain family protein (656 aa)
     
        0.429
AT2G40250
GDSL esterase/lipase (361 aa)
     
        0.409
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (8%) [HD]