• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G50160 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50160" - BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50160BEST Arabidopsis thaliana protein match is- Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR-AT2G04420.1); Has 34 Blast hits to 34 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (73 aa)    
Predicted Functional Partners:
AT4G08270
Glutathione S-transferase T3-like protein; BEST Arabidopsis thaliana protein match is- DNA binding (TAIR-AT3G47680.1); Has 29 Blast hits to 29 proteins in 3 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (99 aa)
     
        0.433
AT3G29785
Pol-like polyprotein/retrotransposon; Unknown protein; Has 90 Blast hits to 90 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (109 aa)
     
        0.433
AT1G43415
Unknown protein; Has 1 Blast hits to 1 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (117 aa)
     
        0.431
AT1G21925
Encodes a Plant thionin family protein (100 aa)
     
        0.430
AT2G07200
Cysteine proteinases superfamily protein; Its function is described as cysteine-type peptidase activity; Involved in proteolysis; Located in cellular_component unknown; Contains the following InterPro domains- Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro-IPR003653); Has 37 Blast hits to 37 proteins in 3 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (151 aa)
     
        0.426
AT4G03728
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in cellular_component unknown; Has 6 Blast hits to 6 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (141 aa)
     
        0.424
AT1G47680
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G47700.1); Has 3 Blast hits to 3 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (104 aa)
     
        0.424
AT1G43320
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in endomembrane system; Has 6 Blast hits to 4 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (118 aa)
     
        0.424
AT5G28885
Unknown protein; Contains the following InterPro domains- Protein of unknown function DUF223 (InterPro-IPR003871); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (184 aa)
     
        0.422
AT5G09340
Ubiquitin family protein; Contains the following InterPro domains- Ubiquitin (InterPro-IPR000626), Ubiquitin supergroup (InterPro-IPR019955); BEST Arabidopsis thaliana protein match is- ubiquitin 12 (TAIR-AT1G55060.1); Has 8020 Blast hits to 3500 proteins in 614 species- Archae - 0; Bacteria - 2; Metazoa - 3485; Fungi - 998; Plants - 2061; Viruses - 142; Other Eukaryotes - 1332 (source- NCBI BLink) (79 aa)
     
        0.422
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (13%) [HD]