• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
AT1G50280 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50280" - BTB/POZ domain-containing protein At1g50280 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT1G50280BTB/POZ domain-containing protein At1g50280; May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (525 aa)    
Predicted Functional Partners:
AT3G49050
Putative calmodulin-binding heat-shock protein; alpha/beta-Hydrolases superfamily protein; Its function is described as triglyceride lipase activity, calmodulin binding; Involved in lipid catabolic process, lipid metabolic process; Located in endomembrane system; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Lipase, class 3 (InterPro-IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro-IPR005592); BEST Arabidopsis thaliana protein match is- alpha/beta-Hydrolases superfamily protein (TAIR-AT4G00500.2); Has 551 Bla [...] (477 aa)
           
  0.588
AT2G43110
U3 containing 90S pre-ribosomal complex subunit; Unknown protein; Has 212 Blast hits to 211 proteins in 96 species- Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source- NCBI BLink) (288 aa)
           
  0.588
B120
G-type lectin S-receptor-like serine/threonine-protein kinase B120; B120; Its function is described as protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; Involved in protein amino acid phosphorylation, recognition of pollen; Located in plasma membrane; Expressed in 13 plant structures; Expressed during 8 growth stages; Contains the following InterPro domains- Curculin-like (mannose-binding) lectin (InterPro-IPR001480), PAN-2 domain (InterPro-IPR013227), Apple-like (InterPro-IPR003609), Protein kinase, catalytic domain (InterPro-IPR000719), S- [...] (849 aa)
           
  0.563
AT4G16150
Calmodulin-binding transcription activator 5; Transcription activator. Binds to the DNA consensus sequence 5’-[ACG]CGCG[GTC]-3’ (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (923 aa)
           
  0.563
AT3G16940
Calmodulin-binding transcription activator 6; Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5’-[ACG]CGCG[GTC]-3’ (By similarity). Regulates transcriptional activity in response to calcium signals (Probable) (845 aa)
           
  0.563
ACHT3
Atypical CYS HIS rich thioredoxin 3; Probable thiol-disulfide oxidoreductase that may participate in various redox reactions (273 aa)
           
  0.563
AT1G61610
Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610; S-locus lectin protein kinase family protein; Its function is described as in 6 functions; Involved in protein amino acid phosphorylation, recognition of pollen; Located in endomembrane system; Expressed in 7 plant structures; Expressed during 6 growth stages; Contains the following InterPro domains- Curculin-like (mannose-binding) lectin (InterPro-IPR001480), Protein kinase, ATP binding site (InterPro-IPR017441), PAN-2 domain (InterPro-IPR013227), Apple-like (InterPro-IPR003609), EGF-like, type 3 (InterP [...] (842 aa)
           
  0.563
ACHT4
Atypical CYS HIS rich thioredoxin 4; Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase (275 aa)
           
  0.563
AT3G12960
Seed maturation protein; Unknown protein; Has 44 Blast hits to 44 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (86 aa)
           
  0.555
ALIS1
ALA-interacting subunit 1; Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3; Belongs to the CDC50/LEM3 family (350 aa)
           
  0.475
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (11%) [HD]