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AT1G50290 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G50290" - At1g50290/F14I3_12 in Arabidopsis thaliana
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
AT1G50290At1g50290/F14I3_12; Unknown protein; Has 2 Blast hits to 2 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (134 aa)    
Predicted Functional Partners:
AT3G61113
Ubiquitin-related modifier 1 homolog 2; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2- thiolation reaction by being thiocarboxylated (-COSH) at its C- terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress [...] (99 aa)
           
  0.904
AT3G48410
alpha/beta-Hydrolases superfamily protein; Contains the following InterPro domains- Alpha/beta hydrolase fold-1 (InterPro-IPR000073); BEST Arabidopsis thaliana protein match is- alpha/beta-Hydrolases superfamily protein (TAIR-AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species- Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source- NCBI BLink) (385 aa)
           
  0.865
ATCP1
NaCl-inducible Ca2+-binding protein-like; AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl (160 aa)
           
  0.862
LEA7
Late embryogenesis abundant protein (LEA) family protein; Involved in dehydration and freezing tolerance. Protects and stabilizes the enzyme activities of ADP-glucose- pyrophosphorylase (AGPase) and glucose-6-phosphate dehydrogenase (G6PDH) during drought stress and freezing. Prevents aggregation of leaf soluble proteins during drought stress. Does not stabilize liposomes during drying and rehydration; Belongs to the LEA type 4 family (169 aa)
           
  0.806
GOX1
Aldolase-type TIM barrel family protein; Its function is described as glycolate oxidase activity; Involved in oxidation reduction, metabolic process; Located in 7 components; Expressed in cotyledon, fruit, guard cell, juvenile leaf, leaf; Expressed during seedling growth; Contains the following InterPro domains- Aldolase-type TIM barrel (InterPro-IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro-IPR008259), FMN-dependent dehydrogenase (InterPro-IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro-IPR012133); BEST Arabidopsis thaliana pro [...] (367 aa)
           
  0.777
XRN4
5’-3’ exoribonuclease 4; Possesses 5’->3’ exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades miRNA target cleavage products that lack a 5’-cap structure. Antagonizes the negative feedback regulation on EIN3 by promoting EBF1 and EBF2 mRNA decay, which consequently allows the accumulation of EIN3 protein to trigger the ethylene response; Belongs to the 5’-3’ exonuclease family. XRN2/RAT1 subfamily (947 aa)
           
  0.580
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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