STRINGSTRING
TAF15 protein (Arabidopsis thaliana) - STRING interaction network
"TAF15" - TBP-associated factor 15 in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF15TBP-associated factor 15; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (372 aa)    
Predicted Functional Partners:
TAF4
TBP-associated factor 4; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (852 aa)
       
      0.995
TAF4B
TBP-associated factor 4B; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (720 aa)
       
      0.995
EER4
ENHANCED ETHYLENE RESPONSE 4; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Required for the expression of a subset of ethylene-responsive genes. Probably involved in the negative regulation of cytokinin sensitivity (683 aa)
       
      0.995
SUA
Suppressor of abi3-5; Splicing factor that controls alternative splicing of the developmental regulator ABI3. Reduces splicing of a cryptic intron in ABI3, leading to a decreased in ABI3-beta transcript (PubMed-20525852). Regulates the splicing of the receptor-like kinase SNC4/LRKL-2.6 (PubMed-25267732) (1008 aa)
     
    0.939
AT2G41020
WW domain-containing protein (463 aa)
     
 
    0.929
ABH1
ABA HYPERSENSITIVE 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5’-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary miRNA processing. In the CBC complex, ABH1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of CBP20 and lock the CBC into a high affinity cap-binding state with the cap str [...] (848 aa)
         
  0.925
CSP3
Cold shock domain protein 3; Chaperone that binds to RNA, single- (ssDNA) and double- stranded (dsDNA) DNA, and unwinds nucleic acid duplex. Promotes freezing tolerance (301 aa)
     
    0.925
AT2G44710
RNA recognition motif-containing protein (809 aa)
     
 
    0.922
AT1G28060
Pre-mRNA-splicing factor 3 (786 aa)
     
 
    0.920
U1-70K
Encodes U1 snRNP 70K; Mediates the splicing of pre-mRNA by binding to the loop I region of U1-snRNA (427 aa)
     
    0.919
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (10%) [HD]