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AT1G53950 protein (Arabidopsis thaliana) - STRING interaction network
"AT1G53950" - Ubiquitin-like superfamily protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT1G53950Ubiquitin-like superfamily protein; Contains the following InterPro domains- Ubiquitin subgroup (InterPro-IPR019956), Ubiquitin (InterPro-IPR000626), Ubiquitin supergroup (InterPro-IPR019955); BEST Arabidopsis thaliana protein match is- Ubiquitin family protein (TAIR-AT4G02890.4); Has 10458 Blast hits to 4586 proteins in 685 species- Archae - 0; Bacteria - 26; Metazoa - 4341; Fungi - 1141; Plants - 2617; Viruses - 325; Other Eukaryotes - 2008 (source- NCBI BLink) (216 aa)    
Predicted Functional Partners:
UBC27
Ubiquitin-conjugating enzyme E2 27; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins; Belongs to the ubiquitin-conjugating enzyme family (203 aa)
     
  0.978
UBP14
Ubiquitin carboxyl-terminal hydrolase 14; Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency (797 aa)
     
  0.976
UCH3
Ubiquitin C-terminal hydrolase 3 (UCH3); Its function is described as ubiquitin thiolesterase activity; Involved in ubiquitin-dependent protein catabolic process; Located in intracellular; Expressed in 24 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro-IPR001578); BEST Arabidopsis thaliana protein match is- Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR-AT1G65650.1); Has 1294 Blast hits to 1288 proteins in 232 species- Archae - 0; Bacteria - 0; Metazoa - 624; Fun [...] (234 aa)
       
  0.976
UPL5
E3 ubiquitin-protein ligase UPL5; E3 ubiquitin protein ligase that regulates leaf senescence through ubiquitination and subsequent degradation of WRKY53 (873 aa)
       
  0.975
AT1G18660
Zinc finger (C3HC4-type RING finger) family protein; Its function is described as ATP-dependent peptidase activity, binding, zinc ion binding; Involved in proteolysis; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Peptidase S16, lon N-terminal (InterPro-IPR003111), Zinc finger, RING-type, conserved site (InterPro-IPR017907), Tetratricopeptide-like helical (InterPro-IPR011990), Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- ATP-depe [...] (491 aa)
     
  0.973
RPN10
26S proteasome non-ATPase regulatory subunit 4 homolog; Plays a role in maintaining the structural integrity of the 19S regulatory particle (RP), subcomplex of the 26S proteasome. Plays a major role in both the direct and indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for ’Lys-48’-linked ubiquitin chains. Acts as a potential docking subunit for both ubiquitin receptors RAD23s and [...] (386 aa)
     
  0.972
RPT3
26S proteasome regulatory subunit 6B homolog; The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (408 aa)
     
  0.972
ATS9
26S proteasome non-ATPase regulatory subunit 11 homolog; Component of the lid subcomplex of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. In the complex, RPN6A is required for proteasome assembly (By similarity) (419 aa)
     
  0.971
UBC22
Ubiquitin-conjugating enzyme E2 22; Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins; Belongs to the ubiquitin-conjugating enzyme family (251 aa)
       
  0.971
UBP22
Ubiquitin carboxyl-terminal hydrolase 22; Recognizes and hydrolyzes the peptide bond at the C- terminal Gly of ubiquitin. Involved in the processing of poly- ubiquitin precursors as well as that of ubiquitinated proteins (By similarity) (557 aa)
       
  0.970
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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