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STRINGSTRING
AT2G37320 protein (Arabidopsis thaliana) - STRING interaction network
"AT2G37320" - Tetratricopeptide repeat in Arabidopsis thaliana
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT2G37320Tetratricopeptide repeat (TPR)-like superfamily protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in mitochondrion; Expressed in shoot apex, embryo, leaf whorl, flower, seed; Expressed during F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT3G24000.1); Has 40972 Blast [...] (500 aa)    
Predicted Functional Partners:
NAF1
Nuclear assembly factor 1 (NAF1); Its function is described as snoRNA binding, pseudouridine synthase activity; Involved in biological_process unknown; Located in box H/ACA snoRNP complex; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro-IPR007504); Has 55446 Blast hits to 31211 proteins in 1683 species- Archae - 434; Bacteria - 10062; Metazoa - 16821; Fungi - 8873; Plants - 3938; Viruses - 821; Other Eukaryotes - 14497 (source- NCBI BLink) (801 aa)
      
   
  0.643
AT1G02370
Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G01990.1); Has 6320 Blast hits to 3912 proteins in 155 species- Archae - 0; Bacteria - 6; Metazoa - 44; Fungi - 46; Plants - 6080; Viruses - 0; Other Eukaryotes - 144 (source- NCBI BLink) (537 aa)
            
  0.643
AT1G06270
Pentatricopeptide repeat (PPR) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- rna processing factor 2 (TAIR-AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source- NCBI BLink) (343 aa)
            
  0.641
SHOT1
Mitochondrial transcription termination factor family protein; Transcription termination factor involved in the regulation of mitochondrial-encoded gene expression. Essential for normal plant growth and development (558 aa)
        
 
  0.632
AT1G10520
DNA polymerase lambda (POLL); Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Has both DNA polymerase and terminal transferase activities. Has a 5’-deoxyribose-5-phosphate lyase (dRP lyase) activity (By similarity). Involved in the repair of transposon-induced DNA double strand breaks (DSBs). Involved in repair of UV-B-mediated DNA damage during seedling development through an excision repair mechanism. Involved the repair of DSBs induced by high salinity and DNA cross-linking agent. Functions vi [...] (529 aa)
            
  0.625
NUP155
Nuclear pore complex protein NUP155; Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport (1464 aa)
            
  0.623
At1g10270
Pentatricopeptide repeat-containing protein At1g10270; May function as a transcriptional regulator essential for early embryogenesis (913 aa)
            
  0.613
BIR6
Pentatricopeptide repeat-containing protein At3g48250, chloroplastic; Pentatricopeptide repeat (PPR) superfamily protein; Involved in biological_process unknown; Located in chloroplast; Expressed in 21 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT3G02490.1); Has 21230 Blast hits to 7475 proteins in 220 species- Archae - 2; Bacteria - 3; Metazoa - 76; Fungi - 161; Plants - 20609; Viruses - 0 [...] (621 aa)
            
  0.603
AT1G74120
Mitochondrial transcription termination factor family protein; Transcription termination factor required for mitochondrial NAD2 intron 3 splicing and normal membrane respiratory chain Complex I activity. Essential for normal plant growth and development. Binds to RNA but not to double-stranded DNA (445 aa)
        
 
  0.585
TAFII59
Transcription initiation factor TFIID subunit 6; Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant (549 aa)
            
  0.568
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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