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AT2G40720 protein (Arabidopsis thaliana) - STRING interaction network
"AT2G40720" - Tetratricopeptide repeat in Arabidopsis thaliana
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT2G40720Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G21300.1); Has 52244 Blast hits to 13768 proteins in 266 species- Archae - 0; Bacteria - 9; Metazoa - 106; Fungi - 105; Plants - 51420; Viruses - 0; Other Eukaryotes - 604 (source- NCBI BLink); Belongs to the PPR family. PCMP-E subfamily (860 aa)    
Predicted Functional Partners:
AT5G17600
RING/U-box superfamily protein; Its function is described as zinc ion binding; Expressed in 19 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, C3HC4 RING-type (InterPro-IPR018957); BEST Arabidopsis thaliana protein match is- RING/U-box superfamily protein (TAIR-AT3G03550.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (362 aa)
           
  0.903
AT1G48120
Serine/threonine-protein phosphatase 7 long form homolog; Maybe required to maintain cell division activity in meristematic cells; Belongs to the PPP phosphatase family. PP-7 subfamily (1340 aa)
           
  0.830
AT1G02370
Pentatricopeptide repeat-containing protein At1g02370, mitochondrial; Tetratricopeptide repeat (TPR)-like superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT4G01990.1); Has 6320 Blast hits to 3912 proteins in 155 species- Archae - 0; Bacteria - 6; Metazoa - 44; Fungi - 46; Plants - 6080; Viruses - 0; Other Eukaryotes - 144 (source- NCBI BLink) (537 aa)
           
  0.642
AT2G28050
Pentatricopeptide repeat (PPR) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR-AT2G32630.1); Has 27131 Blast hits to 10367 proteins in 260 species- Archae - 1; Bacteria - 82; Metazoa - 143; Fungi - 90; Plants - 26257; Viruses - 0; Other Eukaryotes - 558 (source- NCBI BLink) (462 aa)
           
  0.639
NAF1
Nuclear assembly factor 1 (NAF1); Its function is described as snoRNA binding, pseudouridine synthase activity; Involved in biological_process unknown; Located in box H/ACA snoRNP complex; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro-IPR007504); Has 55446 Blast hits to 31211 proteins in 1683 species- Archae - 434; Bacteria - 10062; Metazoa - 16821; Fungi - 8873; Plants - 3938; Viruses - 821; Other Eukaryotes - 14497 (source- NCBI BLink) (801 aa)
     
   
  0.626
AT1G06270
Pentatricopeptide repeat (PPR) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- rna processing factor 2 (TAIR-AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source- NCBI BLink) (343 aa)
           
  0.624
AT1G10520
DNA polymerase lambda (POLL); Repair polymerase involved in base excision repair (BER) and responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Has both DNA polymerase and terminal transferase activities. Has a 5’-deoxyribose-5-phosphate lyase (dRP lyase) activity (By similarity). Involved in the repair of transposon-induced DNA double strand breaks (DSBs). Involved in repair of UV-B-mediated DNA damage during seedling development through an excision repair mechanism. Involved the repair of DSBs induced by high salinity and DNA cross-linking agent. Functions vi [...] (529 aa)
           
  0.612
SHOT1
Mitochondrial transcription termination factor family protein; Transcription termination factor involved in the regulation of mitochondrial-encoded gene expression. Essential for normal plant growth and development (558 aa)
       
 
  0.596
NUP155
Nuclear pore complex protein NUP155; Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport (1464 aa)
           
  0.591
AT1G74120
Mitochondrial transcription termination factor family protein; Transcription termination factor required for mitochondrial NAD2 intron 3 splicing and normal membrane respiratory chain Complex I activity. Essential for normal plant growth and development. Binds to RNA but not to double-stranded DNA (445 aa)
       
 
  0.574
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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