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VGDH1 protein (Arabidopsis thaliana) - STRING interaction network
"VGDH1" - Plant invertase/pectin methylesterase inhibitor superfamily in Arabidopsis thaliana
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Predicted Interactions
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textmining
co-expression
protein homology
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VGDH1Plant invertase/pectin methylesterase inhibitor superfamily; Acts in the modification of cell walls via demethylesterification of cell wall pectin. Plays an important role in growth of pollen tubes in female floral tissues, possibly via enhancing the interaction between the pollen tube and female floral tissues by modification of the cell walls; In the N-terminal section; belongs to the PMEI family (588 aa)    
Predicted Functional Partners:
AT3G01270
Pectate lyase family protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 20 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectate lyase, N-terminal (InterPro-IPR007524), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectate lyase family protein (TAIR-AT5G [...] (475 aa)
 
 
  0.856
AT5G15110
Pectate lyase family protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectate lyase, N-terminal (InterPro-IPR007524), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold ( [...] (472 aa)
   
 
  0.822
AT59
Pectate lyase family protein; AT59; Its function is described as lyase activity, pectate lyase activity; Involved in plant-type cell wall organization; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectate lyase, N-terminal (InterPro-IPR007524), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin [...] (459 aa)
 
 
  0.806
AT1G30350
Pectin lyase-like superfamily protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in petal, leaf whorl, sepal, flower; Expressed during 4 anthesis, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamil [...] (368 aa)
 
 
  0.788
AT2G02720
Pectate lyase family protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 9 plant structures; Expressed during L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), Pectate lyase, N-terminal (InterPro-IPR007524), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold ( [...] (455 aa)
 
 
  0.774
AT1G67750
Pectate lyase family protein; Its function is described as pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 21 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT5G63180. [...] (408 aa)
 
   
  0.767
AT3G09540
Pectin lyase-like superfamily protein; Its function is described as lyase activity, pectate lyase activity; Involved in N-terminal protein myristoylation; Expressed in 22 plant structures; Expressed during 12 growth stages; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT3G55140.1); Has 1920 Blast hits to 1910 proteins in 308 s [...] (378 aa)
 
   
  0.766
AT3G55140
Pectin lyase-like superfamily protein; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT3G09540.1); Has 1866 Blast hits to 1858 proteins in 295 species- Archae - 2; Bacteria - 979; Metazoa - 0; Fungi - 175; Plants - 677; Viruses - 0; Other Eukaryotes - 33 (source- NCBI BLink) (331 aa)
 
   
  0.761
AT3G24230
Pectate lyase family protein; Its function is described as lyase activity, pectate lyase activity; Involved in biological_process unknown; Located in endomembrane system; Expressed in 17 plant structures; Expressed during 9 growth stages; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein ( [...] (452 aa)
 
   
  0.760
AT5G09280
Pectin lyase-like superfamily protein; Contains the following InterPro domains- Pectin lyase fold/virulence factor (InterPro-IPR011050), AmbAllergen (InterPro-IPR018082), Pectate lyase/Amb allergen (InterPro-IPR002022), Pectin lyase fold (InterPro-IPR012334), Parallel beta-helix repeat (InterPro-IPR006626); BEST Arabidopsis thaliana protein match is- Pectin lyase-like superfamily protein (TAIR-AT1G30350.1); Has 1558 Blast hits to 1550 proteins in 258 species- Archae - 0; Bacteria - 650; Metazoa - 0; Fungi - 219; Plants - 684; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink) (297 aa)
 
   
  0.741
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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