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AT3G13580 protein (Arabidopsis thaliana) - STRING interaction network
"AT3G13580" - Ribosomal protein L30/L7 family protein in Arabidopsis thaliana
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second shell of interactors
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AT3G13580Ribosomal protein L30/L7 family protein; Its function is described as structural constituent of ribosome, transcription regulator activity; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L30, N-terminal (InterPro-IPR012988), Ribosomal protein L7, eukaryotic (InterPro-IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro-IPR000517), Ribosomal protein L30, conserved site [...] (244 aa)    
Predicted Functional Partners:
AT3G49910
Translation protein SH3-like family protein; Its function is described as structural constituent of ribosome; Involved in response to cold, translation; Located in 8 components; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Translation protein SH3-like (InterPro-IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro-IPR005756), Ribosomal protein L24, SH3-like (InterPro-IPR014723), Ribosomal protein L24/L26, conserved site (InterPro-IPR005825), KOW (InterPro-IPR005824); BEST Arabidopsis thaliana protein match is- [...] (146 aa)
   
  0.999
EMB2207
Encodes a cytoplasmic ribosomal protein; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
  0.999
AT3G09630
Ribosomal protein L4/L1 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in 9 components; Expressed in 26 plant structures; Expressed during 14 growth stages; Contains the following InterPro domains- Ribosomal protein L4/L1e (InterPro-IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro-IPR013000); BEST Arabidopsis thaliana protein match is- Ribosomal protein L4/L1 family (TAIR-AT5G02870.1); Has 1142 Blast hits to 1141 proteins in 405 species- Archae - 316; Bacteria - 17; Metazoa - 269; Fungi - 177; [...] (406 aa)
   
  0.999
RPL5B
60S ribosomal protein L5-2; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
  0.999
RPL5A
60S ribosomal protein L5-1; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl- transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...] (301 aa)
   
  0.999
AT2G37190
Ribosomal protein L11 family protein; Binds directly to 26S ribosomal RNA (166 aa)
   
  0.999
AT4G27090
Ribosomal protein L14; Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis; Located in 8 components; Expressed in 24 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L14 (InterPro-IPR002784); BEST Arabidopsis thaliana protein match is- Ribosomal protein L14 (TAIR-AT2G20450.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (134 aa)
   
  0.999
AT5G02870
Ribosomal protein L4/L1 family; Its function is described as structural constituent of ribosome; Involved in translation; Located in 8 components; Expressed in 26 plant structures; Expressed during 15 growth stages; Contains the following InterPro domains- Ribosomal protein L4/L1e (InterPro-IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro-IPR013000); BEST Arabidopsis thaliana protein match is- Ribosomal protein L4/L1 family (TAIR-AT3G09630.1); Has 1138 Blast hits to 1137 proteins in 402 species- Archae - 316; Bacteria - 12; Metazoa - 270; Fungi - 177; [...] (407 aa)
   
  0.999
AT3G62870
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Its function is described as structural constituent of ribosome; Involved in translation; Located in cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane; Expressed in 25 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Ribosomal protein L7A/L8 (InterPro-IPR001921), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro-IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro-IPR004038), Ribosomal protein L7Ae conserved site (InterPro-IPR004037); BEST Arabidops [...] (256 aa)
   
  0.999
AT5G46430
Ribosomal protein L32e; Its function is described as structural constituent of ribosome; Involved in translation, ribosome biogenesis; Located in ribosome, cytosolic large ribosomal subunit; Contains the following InterPro domains- Ribosomal protein L32e (InterPro-IPR001515), Ribosomal protein L32e, conserved site (InterPro-IPR018263); BEST Arabidopsis thaliana protein match is- Ribosomal protein L32e (TAIR-AT4G18100.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- N [...] (133 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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