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AT4G13650 protein (Arabidopsis thaliana) - STRING interaction network
"AT4G13650" - Pentatricopeptide repeat in Arabidopsis thaliana
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
protein homology
Your Input:
Gene Fusion
AT4G13650Pentatricopeptide repeat (PPR) superfamily protein; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species- Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source- NCBI BLink); Belongs to the PPR family. PCMP-H subfamily (1064 aa)    
Predicted Functional Partners:
Cysteine/Histidine-rich C1 domain family protein; Its function is described as zinc ion binding; Expressed in hypocotyl, root, flower; Expressed during petal differentiation and expansion stage; Contains the following InterPro domains- Zinc finger, RING-type (InterPro-IPR001841), DC1 (InterPro-IPR004146), Zinc finger, PHD-type (InterPro-IPR001965), C1-like (InterPro-IPR011424); BEST Arabidopsis thaliana protein match is- Cysteine/Histidine-rich C1 domain family protein (TAIR-AT4G10370.1); Has 1904 Blast hits to 942 proteins in 39 species- Archae - 0; Bacteria - 0; Metazoa - 298; Fungi [...] (681 aa)
Violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is- non-photochemical quenching 1 (TAIR-AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source- NCBI BLink) (522 aa)
Glucan synthase-like 1; Required the formation of the callose wall separating the tetraspores (interstitial wall), but not for the callose wall surrounding the pollen mother cells (peripheral wall). Functionally redudant to CALS12 (GSL5). During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals (1768 aa)
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity) (495 aa)
BRICK1, putative; Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2 (85 aa)
Cryptochrome DASH, chloroplastic/mitochondrial; Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome; Belongs to the DNA photolyase class-1 family (526 aa)
Transcription activator GLK2; Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues. Prevents premature senescence (386 aa)
Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion; Belongs to the carbohydrate kinase PfkB family (345 aa)
Adenosine kinase 1; ATP dependent phosphorylation of adenosine and other related nucleoside analogs to monophosphate derivatives. Essential to sustain methyl recycling (344 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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