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AT5G08420 protein (Arabidopsis thaliana) - STRING interaction network
"AT5G08420" - RNA-binding KH domain-containing protein in Arabidopsis thaliana
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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AT5G08420RNA-binding KH domain-containing protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (391 aa)    
Predicted Functional Partners:
AT4G04940
Transducin family protein / WD-40 repeat family protein; Its function is described as nucleotide binding; Involved in rRNA processing; Located in CUL4 RING ubiquitin ligase complex; Expressed in 20 plant structures; Expressed during 11 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), WD40 repeat, conserved site (InterPro-IPR019775), WD40 repeat (InterPro-IPR001680), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), Small-subunit processome, Utp21 (InterPro-IPR007319), WD40/YVTN repeat- [...] (910 aa)
     
  0.999
TOZ
Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development (876 aa)
     
  0.999
AT4G28200
U3 small nucleolar RNA-associated-like protein; Its function is described as molecular_function unknown; Involved in RNA processing; Located in intracellular; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA-processing protein, HAT helix (InterPro-IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 492 Blast hits to 480 proteins in 206 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (648 aa)
     
  0.999
AT5G14050
U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA (546 aa)
     
  0.999
SWA1
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant (530 aa)
     
  0.999
EMB2762
CCAAT-binding factor; EMBRYO DEFECTIVE 2762 (EMB2762); Its function is described as molecular_function unknown; Involved in biological_process unknown; Located in membrane; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CCAAT-binding factor (InterPro-IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (577 aa)
     
  0.999
AT3G10530
Transducin/WD40 repeat-like superfamily protein; Its function is described as nucleotide binding; Involved in biological_process unknown; Located in CUL4 RING ubiquitin ligase complex; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- WD40 repeat 2 (InterPro-IPR019782), BING4, C-terminal (InterPro-IPR012952), WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), WD40 repeat, sub [...] (536 aa)
     
  0.999
AT1G63810
Uncharacterized protein At1g63810; Contains the following InterPro domains- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1053 aa)
     
  0.999
AT4G28450
WD repeat and SOF domain-containing protein 1; This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase (452 aa)
     
  0.999
AT3G57000
Nucleolar essential protein-related; Contains the following InterPro domains- Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro-IPR005304); Has 1079 Blast hits to 938 proteins in 280 species- Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source- NCBI BLink) (298 aa)
   
  0.999
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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