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AT5G20600 protein (Arabidopsis thaliana) - STRING interaction network
"AT5G20600" - Ribosomal RNA processing-like protein in Arabidopsis thaliana
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AT5G20600Ribosomal RNA processing-like protein; Its function is described as molecular_function unknown; Involved in rRNA processing; Located in preribosome, small subunit precursor; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- Nucleolar, Nop52 (InterPro-IPR010301); Has 543 Blast hits to 530 proteins in 201 species- Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source- NCBI BLink) (532 aa)    
Predicted Functional Partners:
AT2G40360
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression; Belongs to the WD repeat BOP1/ERB1 family (753 aa)
     
 
  0.997
AT5G04600
RNA-binding (RRM/RBD/RNP motifs) family protein; Its function is described as RNA binding, nucleotide binding, nucleic acid binding; Involved in biological_process unknown; Located in nucleolus; Expressed in 22 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- RNA recognition motif, RNP-1 (InterPro-IPR000504), Nucleotide-binding, alpha-beta plait (InterPro-IPR012677); BEST Arabidopsis thaliana protein match is- RNA recognition motif (RRM)-containing protein (TAIR-AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; B [...] (222 aa)
     
 
  0.997
AT3G22660
Probable rRNA-processing protein EBP2 homolog; Required for the processing of the 27S pre-rRNA (By similarity). Plays an important role in plant growth and senescence by modulating ribosome biogenesis in nucleolus. Associates with ribosomes (293 aa)
     
 
  0.995
MEE49
Maternal effect embryo arrest 49 (MEE49); Contains the following InterPro domains- Brix domain (InterPro-IPR007109); BEST Arabidopsis thaliana protein match is- Ribosomal RNA processing Brix domain protein (TAIR-AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species- Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source- NCBI BLink) (343 aa)
     
 
  0.995
AT1G23280
MAK16 protein-related; Contains the following InterPro domains- Mak16 protein (InterPro-IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species- Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source- NCBI BLink) (303 aa)
     
 
  0.995
AT5G48240
Unknown protein; Its function is described as molecular_function unknown; Involved in biological_process unknown; Contains the following InterPro domains- Protein of unknown function DUF1665 (InterPro-IPR012459); Has 286 Blast hits to 283 proteins in 145 species- Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source- NCBI BLink) (356 aa)
     
 
  0.994
AT1G79150
Binding; Its function is described as binding; Involved in biological_process unknown; Located in cellular_component unknown; Expressed in 23 plant structures; Expressed during 13 growth stages; Contains the following InterPro domains- CCAAT-binding factor (InterPro-IPR005612), Armadillo-type fold (InterPro-IPR016024), Nucleolar complex-associated (InterPro-IPR011501); Has 3184 Blast hits to 2630 proteins in 361 species- Archae - 21; Bacteria - 280; Metazoa - 1055; Fungi - 428; Plants - 179; Viruses - 26; Other Eukaryotes - 1195 (source- NCBI BLink) (830 aa)
     
 
  0.994
AT5G15550
Transducin/WD40 repeat-like superfamily protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family (433 aa)
     
 
  0.994
AT5G14520
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression. Required for normal root cell growth and differentiation (590 aa)
     
 
  0.994
AT1G29320
Transducin/WD40 repeat-like superfamily protein; Contains the following InterPro domains- WD40 repeat-like-containing domain (InterPro-IPR011046), WD40-repeat-containing domain (InterPro-IPR017986), WD40 repeat (InterPro-IPR001680), WD40/YVTN repeat-like-containing domain (InterPro-IPR015943), WD40 repeat, subgroup (InterPro-IPR019781); Has 10050 Blast hits to 5411 proteins in 439 species- Archae - 25; Bacteria - 1235; Metazoa - 2837; Fungi - 1519; Plants - 647; Viruses - 46; Other Eukaryotes - 3741 (source- NCBI BLink) (468 aa)
     
 
  0.994
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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