STRINGSTRING
AT5G44230 protein (Arabidopsis thaliana) - STRING interaction network
"AT5G44230" - Pentatricopeptide repeat in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT5G44230Pentatricopeptide repeat (PPR) superfamily protein; Expressed in embryo, leaf; Expressed during D bilateral stage; Contains the following InterPro domains- Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR-AT2G29760.1); Has 34838 Blast hits to 13612 proteins in 233 species- Archae - 0; Bacteria - 9; Metazoa - 42; Fungi - 69; Plants - 34172; Viruses - 0; Other Eukaryotes - 546 (source- NCBI BLink); Belongs to the PPR family. PCMP-H subfamily (657 aa)    
Predicted Functional Partners:
RIP1
Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; Involved in organellar RNA editing. Required for the processing of numerous RNA editing sites in mitochondria and plastids. Binds to the plastid RARE1 factor, a pentatricopeptide repeat-containing protein involved in RNA editing (395 aa)
           
  0.641
MORF3
Multiple organellar RNA editing factor 3, mitochondrial; Involved in organellar RNA editing. Required for the processing of RNA editing sites in mitochondria (244 aa)
           
  0.579
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (15%) [HD]