STRINGSTRING
AT5G51910 protein (Arabidopsis thaliana) - STRING interaction network
"AT5G51910" - TCP family transcription factor in Arabidopsis thaliana
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT5G51910TCP family transcription factor ; Contains the following InterPro domains- Transcription factor, TCP (InterPro-IPR005333), Transcription factor TCP subgroup (InterPro-IPR017887); BEST Arabidopsis thaliana protein match is- TCP family transcription factor (TAIR-AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (293 aa)    
Predicted Functional Partners:
PTF1
Plastid transcription factor 1; Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary- specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3’-ACC-5’ repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (355 aa)
       
 
  0.811
TCP11
TCP family transcription factor; Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter (239 aa)
     
 
0.804
TCP14
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14; Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner (489 aa)
       
 
0.803
AT2G03500
Homeodomain-like superfamily protein; Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature (432 aa)
       
 
  0.775
AT5G52030
TraB family protein; Contains the following InterPro domains- Pheromone shutdown-related, TraB (InterPro-IPR002816); BEST Arabidopsis thaliana protein match is- TraB family protein (TAIR-AT1G05270.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (402 aa)
           
  0.769
AT5G51920
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Its function is described as pyridoxal phosphate binding, catalytic activity; Involved in metabolic process; Located in chloroplast; Contains the following InterPro domains- Pyridoxal phosphate-dependent transferase, major domain (InterPro-IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro-IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro-IPR015421); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G22980.1); Has 991 Blast hits to 937 prot [...] (570 aa)
           
  0.769
HAT2
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein; Homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis (283 aa)
       
      0.762
FRL1
FRIGIDA-like protein 1; Required for FRI-mediated up-regulation of FLC transcripts, but not redundant with FRI and only partially redundant with FRL2. Required for the stabilization of the FRI-C complex; Belongs to the Frigida family (470 aa)
       
      0.762
AT5G07840
Phytochrome-interacting ankyrin-repeat protein 1; Ankyrin repeat family protein; Contains the following InterPro domains- Ankyrin repeat-containing domain (InterPro-IPR020683), Ankyrin repeat (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- Ankyrin repeat family protein (TAIR-AT5G61230.1); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (175 aa)
       
      0.762
ATU2AF65A
U2 snRNP auxilliary factor, large subunit, splicing factor; Necessary for the splicing of pre-mRNA; Belongs to the splicing factor SR family (573 aa)
       
      0.762
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (24%) [HD]