STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCMP-H82Pentatricopeptide repeat-containing protein At3g62890; Belongs to the PPR family. PCMP-H subfamily. (573 aa)    
Predicted Functional Partners:
MUA22.8
Pentatricopeptide repeat-containing protein At5g14080; Belongs to the PPR family. P subfamily.
      
 0.899
F7J7.110
Pentatricopeptide repeat-containing protein At4g21170; Belongs to the PPR family. P subfamily.
   
  
 0.721
PRORP3
Proteinaceous RNase P 3; Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA); Belongs to the PPR family. P subfamily.
      
 0.597
EMB1444
Transcription factor EMB1444; Transcription factor that may regulate root development.
 
 
  
 0.557
F9P14.13
Pentatricopeptide repeat-containing protein At1g06270; Belongs to the PPR family. P subfamily.
   
  
 0.543
PRORP2
Proteinaceous RNase P 2; Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Preferentially binds precursor tRNAs containing short 5' leaders and 3' trailers. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA) ; Belongs to the PPR family. P subfamily.
      
 0.514
K3M16.80
Mediator of RNA polymerase II transcription subunit-like protein.
      
 0.435
LPE1
Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic; Required for light-regulated photosystem II (PSII) biogenesis and grana thylakoids formation by binding to the 5' UTR of PSII subunit mRNAs (e.g. psbJ, psbN and psbA) in a light-dependent manner through a redox-based mechanism, and facilitating the association of HCF173 with target mRNAs, which encodes PSII reaction center proteins (e.g. J, N and D1), thus regulating its expression by modulating ribosome loading. Belongs to the PPR family. P subfamily.
      
 0.431
F3G5.2
Pentatricopeptide repeat-containing protein At2g37230; Belongs to the PPR family. P subfamily.
      
0.420
F21M12.38
Pentatricopeptide repeat-containing protein At1g09900; Belongs to the PPR family. P subfamily.
      
0.416
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.