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Bra000009 protein (Brassica rapa) - STRING interaction network
"Bra000009" - AT3G53740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000009AT3G53740 (E=2e-053) | 60S ribosomal protein L36 (RPL36B) (218 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra040853
AT5G39850 (E=2e-093) | 40S ribosomal protein S9 (RPS9C) (197 aa)
     
  0.999
Bra023511
AT5G15200 (E=1e-094) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra006289
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra006289.1-P
AT5G15200 (E=5e-098) | 40S ribosomal protein S9 (RPS9B) (197 aa)
     
  0.999
Bra020572
AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (468 aa)
     
  0.999
Bra040409
AT4G34670 (E=2e-120) | 40S ribosomal protein S3A (RPS3aB) (262 aa)
     
  0.999
Bra040119
AT4G34670 (E=9e-126) | 40S ribosomal protein S3A (RPS3aB) (261 aa)
     
  0.999
Bra034643
AT4G34670 (E=6e-128) | 40S ribosomal protein S3A (RPS3aB) (261 aa)
     
  0.999
Bra026324
AT4G34670 (E=1e-026) | 40S ribosomal protein S3A (RPS3aB) (90 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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