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Bra000012 protein (Brassica rapa) - STRING interaction network
"Bra000012" - AT2G37650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000012AT2G37650 (E=2e-295) | scarecrow-like transcription factor 9 (SCL9) (673 aa)    
Predicted Functional Partners:
Bra038705
AT3G12250 (E=3e-141) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (334 aa)
       
 
  0.610
Bra034767
AT3G12250 (E=2e-135) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (331 aa)
       
 
  0.610
Bra009241
AT5G06950 (E=3e-137) AHBP-1B, TGA2 | AHBP-1B; DNA binding / transcription activator/ transcription factor/ transcription repressor (310 aa)
       
 
  0.610
Bra001443
AT3G12250 (E=1e-141) TGA6, BZIP45 | TGA6 (TGACG MOTIF-BINDING FACTOR 6); DNA binding / transcription factor (331 aa)
       
 
  0.610
Bra026813
AT1G14685 (E=5e-117) BPC2, BBR/BPC2, ATBPC2 | BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (279 aa)
           
  0.493
Bra026196
AT1G14685 (E=2e-121) BPC2, BBR/BPC2, ATBPC2 | BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (589 aa)
           
  0.493
Bra016686
AT1G14685 (E=2e-135) BPC2, BBR/BPC2, ATBPC2 | BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor (273 aa)
           
  0.493
Bra012102
AT5G66770 (E=6e-080) | scarecrow transcription factor family protein (168 aa)
           
  0.475
Bra029299
AT2G27650 (E=5e-306) | ubiquitin carboxyl-terminal hydrolase-related (1087 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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