STRINGSTRING
Bra000029 protein (Brassica rapa) - STRING interaction network
"Bra000029" - AT2G37940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000029AT2G37940 (E=1e-165) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- phosphatidic acid phosphatase-related / PAP2-related (TAIR-AT3G54020.1); Has 316 Blast hits to 316 proteins in 75 species- Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 55 (source- NCBI BLink). (296 aa)    
Predicted Functional Partners:
Bra037534
AT3G19260 (E=9e-127) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
         
  0.568
Bra026898
AT1G13580 (E=1e-175) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (308 aa)
         
  0.568
Bra026522
AT1G13580 (E=3e-143) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (304 aa)
         
  0.568
Bra022406
AT3G19260 (E=2e-119) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (332 aa)
         
  0.568
Bra011016
AT1G26200 (E=3e-148) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- Longevity assurance, LAG1/LAC1 (InterPro-IPR016439), TRAM, LAG1 and CLN8 homology (InterPro-IPR006634); BEST Arabidopsis thaliana protein match is- LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR-AT1G13580.2). (299 aa)
         
  0.568
Bra011015
AT1G26200 (E=5e-142) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- Longevity assurance, LAG1/LAC1 (InterPro-IPR016439), TRAM, LAG1 and CLN8 homology (InterPro-IPR006634); BEST Arabidopsis thaliana protein match is- LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR-AT1G13580.2). (314 aa)
         
  0.568
Bra001740
AT3G19260 (E=7e-138) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
         
  0.568
Bra029178
AT5G51290 (E=2e-309) | ceramide kinase-related (594 aa)
         
  0.567
Bra030680
AT1G07380 (E=0.0) | ceramidase family protein (769 aa)
         
  0.543
Bra017143
AT2G38010 (E=0.0) | ceramidase family protein (750 aa)
         
  0.543
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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