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Bra000034 protein (Brassica rapa) - STRING interaction network
"Bra000034" - AT2G37990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000034AT2G37990 (E=4e-118) | ribosome biogenesis regulatory protein (RRS1) family protein (319 aa)    
Predicted Functional Partners:
Bra028325
AT3G23620 (E=5e-130) | brix domain-containing protein (316 aa)
     
 
  0.997
Bra014967
AT3G23620 (E=5e-129) | brix domain-containing protein (315 aa)
     
 
  0.997
Bra003349
AT3G58660 (E=2e-125) | 60S ribosomal protein-related (511 aa)
     
      0.997
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.997
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.997
Bra040830
AT3G22660 (E=6e-127) | rRNA processing protein-related (294 aa)
     
      0.997
Bra023812
AT3G22660 (E=3e-124) | rRNA processing protein-related (296 aa)
     
      0.997
Bra001877
AT3G22660 (E=5e-120) | rRNA processing protein-related (286 aa)
     
      0.997
Bra039376
AT3G13180 (E=2e-269) | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (523 aa)
     
      0.996
Bra035594
AT5G55920 (E=4e-205) OLI2 | nucleolar protein, putative (640 aa)
     
      0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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