STRINGSTRING
Bra000035 protein (Brassica rapa) - STRING interaction network
"Bra000035" - AT2G38020 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000035AT2G38020 (E=3e-282) VCL1, MAN, EMB258 | VCL1 (VACUOLELESS 1) (820 aa)    
Predicted Functional Partners:
Bra007106
AT3G54860 (E=0.0) ATVPS33, VPS33 | vacuolar protein sorting protein, putative (593 aa)
     
 
  0.992
Bra018644
AT1G08190 (E=0.0) | vacuolar assembly protein, putative (VPS41) (984 aa)
     
 
  0.982
Bra037410
AT4G00800 (E=0.0) | binding / protein binding / zinc ion binding (1909 aa)
     
 
  0.981
Bra015160
AT2G05170 (E=0.0) ATVPS11 | ATVPS11; binding / protein binding / transporter/ zinc ion binding (934 aa)
     
 
  0.973
Bra019769
AT1G12470 (E=2e-254) | Pep3/Vps18/deep orange family protein (811 aa)
     
 
  0.971
Bra016770
AT1G12470 (E=0.0) | Pep3/Vps18/deep orange family protein (964 aa)
     
 
  0.971
Bra024543
AT1G22860 (E=0.0) | unknown protein (987 aa)
     
 
  0.958
Bra017767
AT4G36630 (E=0.0) EMB2754 | EMB2754 (EMBRYO DEFECTIVE 2754); binding / small GTPase regulator (993 aa)
     
 
  0.958
Bra010565
AT4G36630 (E=7e-099) EMB2754 | EMB2754 (EMBRYO DEFECTIVE 2754); binding / small GTPase regulator (587 aa)
     
 
  0.958
Bra008294
AT1G77140 (E=4e-308) VPS45, ATVPS45 | VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter (569 aa)
     
 
  0.952
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]