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Bra000043 protein (Brassica rapa) - STRING interaction network
"Bra000043" - AT2G38185 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000043AT2G38185 (E=6e-100) | zinc finger (C3HC4-type RING finger) family protein (457 aa)    
Predicted Functional Partners:
Bra038738
AT3G12620 (E=3e-206) | protein phosphatase 2C family protein / PP2C family protein (387 aa)
     
   
  0.551
Bra034749
AT3G12620 (E=2e-200) | protein phosphatase 2C family protein / PP2C family protein (388 aa)
     
   
  0.551
Bra034592
AT4G33920 (E=1e-182) | protein phosphatase 2C family protein / PP2C family protein (385 aa)
     
   
  0.549
Bra028720
AT5G06750 (E=1e-190) | protein phosphatase 2C family protein / PP2C family protein (384 aa)
     
   
  0.549
Bra038895
AT3G51370 (E=3e-196) | protein phosphatase 2C, putative / PP2C, putative (382 aa)
     
   
  0.487
Bra007131
AT3G55050 (E=1e-191) | serine/threonine protein phosphatase 2C (PP2C6) (387 aa)
     
   
  0.487
Bra021218
AT3G17090 (E=3e-197) | protein phosphatase 2C family protein / PP2C family protein (378 aa)
     
   
  0.482
Bra036972
AT4G33920 (E=2e-169) | protein phosphatase 2C family protein / PP2C family protein (374 aa)
     
   
  0.470
Bra007323
AT3G57380 (E=6e-181) | transferase, transferring glycosyl groups (504 aa)
           
  0.418
Bra040157
AT4G28400 (E=1e-144) | protein phosphatase 2C, putative / PP2C, putative (288 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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