STRINGSTRING
Bra000044 protein (Brassica rapa) - STRING interaction network
"Bra000044" - AT4G26690 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000044AT4G26690 (E=1e-238) SHV3, MRH5, GPDL2 | SHV3 (SHAVEN 3); glycerophosphodiester phosphodiesterase/ kinase (1291 aa)    
Predicted Functional Partners:
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
0.938
Bra006205
AT5G13530 (E=0.0) KEG | KEG (KEEP ON GOING); protein binding / protein kinase/ ubiquitin-protein ligase (1608 aa)
     
  0.768
Bra027730
AT1G64460 (E=3e-149) | phosphatidylinositol 3- and 4-kinase family protein (533 aa)
     
  0.766
Bra027702
AT1G64460 (E=3e-155) | phosphatidylinositol 3- and 4-kinase family protein (498 aa)
     
  0.766
Bra026464
AT5G24240 (E=6e-180) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (466 aa)
     
  0.766
Bra006947
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.766
Bra012402
AT5G24240 (E=9e-242) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (1162 aa)
     
  0.766
Bra009742
AT5G24240 (E=1e-274) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.766
Bra006947.1-P
AT5G24240 (E=2e-277) | phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein (574 aa)
     
  0.766
Bra031998
AT3G03305 (E=0.0) | calcineurin-like phosphoesterase family protein (1200 aa)
       
  0.754
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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