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Bra000046 protein (Brassica rapa) - STRING interaction network
"Bra000046" - AT2G38250 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000046AT2G38250 (E=3e-073) | DNA-binding protein-related (294 aa)    
Predicted Functional Partners:
Bra020607
AT5G28300 (E=8e-188) | trihelix DNA-binding protein, putative (608 aa)
           
  0.542
Bra009994
AT5G28300 (E=4e-223) | trihelix DNA-binding protein, putative (610 aa)
           
  0.542
Bra014370
AT1G54060 (E=6e-046) ASIL1 | ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1); sequence-specific DNA binding / transcription factor (335 aa)
           
  0.525
Bra029813
AT3G10040 (E=1e-153) | transcription factor (419 aa)
           
  0.483
Bra001290
AT3G10040 (E=2e-141) | transcription factor (416 aa)
           
  0.483
Bra038662
AT5G08750 (E=2e-118) | zinc finger (C3HC4-type RING finger) family protein (341 aa)
           
  0.456
Bra036731
AT1G33240 (E=7e-179) AT-GTL1, AT-GTL2 | AT-GTL1 (GT2-LIKE 1); DNA binding / transcription factor (630 aa)
           
  0.439
Bra015716
AT1G76880 (E=5e-072) | trihelix DNA-binding protein, putative (551 aa)
           
  0.439
Bra015715
AT1G76890 (E=5e-203) GT2, AT-GT2 | GT2; transcription factor (574 aa)
           
  0.439
Bra008286
AT1G76890 (E=7e-074) GT2, AT-GT2 | GT2; transcription factor (517 aa)
           
  0.439
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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