STRINGSTRING
Bra000047 protein (Brassica rapa) - STRING interaction network
"Bra000047" - AT2G38270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000047AT2G38270 (E=3e-130) CXIP2, ATGRX2 | CXIP2 (CAX-INTERACTING PROTEIN 2); electron carrier/ protein disulfide oxidoreductase (294 aa)    
Predicted Functional Partners:
Bra026428
AT4G26500 (E=4e-093) EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (CHLOROPLAST SULFUR E); enzyme activator/ transcription regulator (349 aa)
   
 
  0.970
Bra037789
AT5G09830 (E=6e-037) | BolA-like family protein (98 aa)
   
 
  0.969
Bra009080
AT5G09830 (E=1e-029) | BolA-like family protein (92 aa)
   
 
  0.969
Bra019100
AT4G26550 (E=3e-099) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SFT2-like (InterPro-IPR011691); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source- NCBI BLink). (452 aa)
   
 
  0.968
Bra030833
AT1G55805 (E=3e-049) | BolA-like family protein (158 aa)
 
 
  0.954
Bra013968
AT5G17560 (E=8e-067) | BolA-like family protein (177 aa)
   
 
  0.943
Bra006413
AT5G17560 (E=4e-065) | BolA-like family protein (181 aa)
   
 
  0.943
Bra002156
AT5G18400 (E=8e-082) | unknown protein (383 aa)
     
 
  0.921
Bra006456
AT5G18400 (E=3e-104) | unknown protein ; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell (270 aa)
       
 
  0.919
Bra009883
AT5G26110 (E=8e-117) | ATP binding / catalytic/ protein kinase (226 aa)
     
 
  0.777
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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