STRINGSTRING
Bra000056 protein (Brassica rapa) - STRING interaction network
"Bra000056" - AT2G38360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000056AT2G38360 (E=1e-089) PRA1.B4 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) (222 aa)    
Predicted Functional Partners:
Bra004965
AT2G40380 (E=3e-069) PRA1.B2 | PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) (213 aa)
     
   
0.907
Bra002626
AT2G40116 (E=1e-167) | phosphoinositide-specific phospholipase C family protein (580 aa)
       
      0.905
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
       
      0.905
Bra013910
AT4G25680 (E=3e-117) | unknown protein (251 aa)
       
      0.896
Bra010452
AT4G25680 (E=9e-128) | unknown protein (254 aa)
       
      0.896
Bra003228
AT3G56110 (E=3e-073) PRA1.B1 | PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (211 aa)
     
   
0.894
Bra009110
AT5G05380 (E=2e-081) PRA1.B3 | PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3) (215 aa)
       
   
0.892
Bra007216
AT3G56110 (E=2e-096) PRA1.B1 | PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) (203 aa)
       
   
0.892
Bra013908
AT4G25680 (E=4e-115) | unknown protein (245 aa)
       
      0.848
Bra040162
AT4G17530 (E=2e-108) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (274 aa)
       
 
  0.693
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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