STRINGSTRING
Bra000067 protein (Brassica rapa) - STRING interaction network
"Bra000067" - AT2G38500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000067AT2G38500 (E=6e-163) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 7 plant structures; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- DTA4 (DOWNSTREAM TARGET OF AGL15-4) (TAIR-AT1G79760.1); Has 26 Blast hits to 26 proteins in 5 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (356 aa)    
Predicted Functional Partners:
Bra026855
AT1G14140 (E=3e-152) | mitochondrial substrate carrier family protein (308 aa)
           
  0.418
Bra010359
AT4G28590 (E=3e-138) | unknown protein (324 aa)
           
  0.418
Bra037755
AT5G63860 (E=4e-170) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (416 aa)
           
  0.416
Bra036755
AT1G34580 (E=2e-227) | monosaccharide transporter, putative (564 aa)
           
  0.416
Bra029198
AT5G63860 (E=6e-165) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (412 aa)
           
  0.416
Bra024242
AT5G63860 (E=1e-173) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (411 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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