STRINGSTRING
Bra000070 protein (Brassica rapa) - STRING interaction network
"Bra000070" - AT2G38570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000070AT2G38570 (E=6e-083) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- PRC-barrel-like (InterPro-IPR011033); Has 29 Blast hits to 29 proteins in 13 species- Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (355 aa)    
Predicted Functional Partners:
Bra028658
AT5G08400 (E=4e-133) | unknown protein (300 aa)
   
          0.470
Bra005991
AT5G08400 (E=1e-138) | unknown protein (331 aa)
   
          0.470
Bra011105
AT4G29400 (E=4e-132) | unknown protein (296 aa)
   
          0.439
Bra034328
AT2G27170 (E=0.0) TTN7, SMC3 | TTN7 (TITAN7); ATP binding / protein binding (1243 aa)
              0.437
Bra028687
AT5G07660 (E=0.0) | structural maintenance of chromosomes (SMC) family protein (1033 aa)
              0.437
Bra025364
AT5G48600 (E=0.0) ATSMC3, ATCAP-C, ATSMC4 | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding / transporter (1246 aa)
              0.437
Bra018145
AT3G47460 (E=0.0) ATSMC2 | ATSMC2; transporter (1175 aa)
              0.437
Bra013254
AT3G54670 (E=5e-291) TTN8, SMC1, ATSMC1 | TTN8 (TITAN8); ATP binding / transporter (1221 aa)
              0.437
Bra012956
AT5G61460 (E=0.0) MIM, ATRAD18 | MIM (hypersensitive to MMS, irradiation and MMC); ATP binding (1053 aa)
              0.437
Bra010079
AT5G62410 (E=0.0) SMC2, TTN3, ATCAP-E1, ATSMC4 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter (1175 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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