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Bra000085 protein (Brassica rapa) - STRING interaction network
"Bra000085" - AT2G38680 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000085AT2G38680 (E=3e-128) | 5’-nucleotidase/ magnesium ion binding (311 aa)    
Predicted Functional Partners:
Bra038939
AT5G35170 (E=1e-103) | adenylate kinase family protein (515 aa)
         
  0.899
Bra038628
AT5G63400 (E=5e-126) ADK1 | ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (240 aa)
         
  0.899
Bra037526
AT5G47840 (E=3e-106) AMK2 | AMK2 (Adenosine monophosphate kinase); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (268 aa)
         
  0.899
Bra035847
AT5G63400 (E=2e-127) ADK1 | ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleobase, nucleoside, nucleotide kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor (240 aa)
         
  0.899
Bra023111
AT2G37250 (E=4e-149) ADK, ATPADK1 | ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase (281 aa)
         
  0.899
Bra017200
AT2G37250 (E=2e-129) ADK, ATPADK1 | ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase (281 aa)
         
  0.899
Bra005057
AT2G39270 (E=3e-113) | adenylate kinase family protein (300 aa)
         
  0.899
Bra000986
AT3G01820 (E=3e-097) | adenylate kinase family protein (263 aa)
         
  0.899
Bra000623
AT5G50370 (E=1e-129) | adenylate kinase, putative (245 aa)
         
  0.899
Bra040030
AT3G07800 (E=2e-108) | thymidine kinase, putative (234 aa)
         
  0.898
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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