STRINGSTRING
Bra000088 protein (Brassica rapa) - STRING interaction network
"Bra000088" - AT2G38710 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra000088AT2G38710 (E=3e-111) | AMMECR1 family (214 aa)    
Predicted Functional Partners:
Bra032029
AT2G25280 (E=2e-149) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Mediator of ErbB2-driven cell motility (Memo), related (InterPro-IPR002737); Has 742 Blast hits to 742 proteins in 323 species- Archae - 138; Bacteria - 240; Metazoa - 132; Fungi - 82; Plants - 26; Viruses - 0; Other Eukaryotes - 124 (source- NCBI BLink). (291 aa)
 
        0.686
Bra007806
AT2G25280 (E=1e-146) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Mediator of ErbB2-driven cell motility (Memo), related (InterPro-IPR002737); Has 742 Blast hits to 742 proteins in 323 species- Archae - 138; Bacteria - 240; Metazoa - 132; Fungi - 82; Plants - 26; Viruses - 0; Other Eukaryotes - 124 (source- NCBI BLink). (291 aa)
 
        0.684
Bra000600
AT5G49930 (E=0.0) emb1441 | emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding (1092 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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