STRINGSTRING
Bra000091 protein (Brassica rapa) - STRING interaction network
"Bra000091" - AT2G38760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000091AT2G38760 (E=3e-150) ANNAT3 | ANNAT3 (ANNEXIN ARABIDOPSIS 3); calcium ion binding / calcium-dependent phospholipid binding (319 aa)    
Predicted Functional Partners:
Bra017103
AT2G38750 (E=1e-143) ANNAT4 | ANNAT4 (ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding (320 aa)
     
   
0.753
Bra000090
AT2G38750 (E=9e-152) ANNAT4 | ANNAT4 (ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding (315 aa)
     
   
0.752
Bra035457
AT1G58220 (E=2e-125) | myb family transcription factor (447 aa)
       
      0.612
Bra027882
AT1G58220 (E=2e-191) | myb family transcription factor (713 aa)
       
      0.612
Bra019998
AT1G09710 (E=3e-172) | DNA binding (577 aa)
       
      0.612
Bra003319
AT3G58110 (E=8e-136) | unknown protein (781 aa)
       
      0.612
Bra002099
AT2G17890 (E=9e-282) CPK16 | CPK16; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ protein kinase/ protein serine/threonine kinase (894 aa)
       
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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