STRINGSTRING
Bra000094 protein (Brassica rapa) - STRING interaction network
"Bra000094" - AT1G61000 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra000094AT1G61000 (E=1e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- mitosis; LOCATED IN- plasma membrane; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Kinetochore protein Nuf2 (InterPro-IPR005549); BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT1G64330.1); Has 41010 Blast hits to 23184 proteins in 1264 species- Archae - 616; Bacteria - 3998; Metazoa - 20566; Fungi - 2893; Plants - 1316; Viruses - 149; Other Eukaryotes - 11472 (source- NCBI BLink). (429 aa)    
Predicted Functional Partners:
Bra007084
AT3G54630 (E=6e-198) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Kinetochore protein Ndc80 (InterPro-IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species- Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source- NCBI BLink). (574 aa)
     
  0.997
Bra031135
AT2G20635 (E=6e-112) | ATP binding / protein kinase/ protein serine/threonine kinase (475 aa)
     
  0.984
Bra015240
AT2G33560 (E=2e-071) | spindle checkpoint protein-related (232 aa)
     
  0.984
Bra019533
AT3G48210 (E=4e-124) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Kinetochore-Ndc80 complex, subunit Spc25 (InterPro-IPR013255); Has 142 Blast hits to 142 proteins in 51 species- Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source- NCBI BLink). (345 aa)
     
  0.980
Bra018074
AT3G48210 (E=2e-025) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 10 plant structures; EXPRESSED DURING- 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Kinetochore-Ndc80 complex, subunit Spc25 (InterPro-IPR013255); Has 142 Blast hits to 142 proteins in 51 species- Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source- NCBI BLink). (164 aa)
     
  0.980
Bra035686
AT2G28620 (E=0.0) | kinesin motor protein-related (1047 aa)
     
  0.917
Bra033832
AT3G45850 (E=0.0) | kinesin motor protein-related (1052 aa)
     
  0.917
Bra033490
AT4G14330 (E=0.0) | phragmoplast-associated kinesin-related protein 2 (PAKRP2) (874 aa)
     
  0.917
Bra023054
AT2G36200 (E=1e-069) | kinesin motor protein-related (243 aa)
     
  0.917
Bra021972
AT2G37420 (E=3e-045) | kinesin motor protein-related (192 aa)
     
  0.917
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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