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Bra000106 protein (Brassica rapa) - STRING interaction network
"Bra000106" - AT2G38920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000106AT2G38920 (E=1e-163) | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (333 aa)    
Predicted Functional Partners:
Bra033354
AT1G02870 (E=1e-095) | unknown protein (194 aa)
           
  0.485
Bra036635
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (702 aa)
           
  0.454
Bra034426
AT4G22990 (E=2e-220) | SPX (SYG1/Pho81/XPR1) domain-containing protein (676 aa)
           
  0.454
Bra027004
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.454
Bra014869
AT4G11810 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.454
Bra013668
AT4G22990 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (700 aa)
           
  0.454
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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